Many analyses have a column giving retention time, in minutes. It tells you at what moment the compound left the chromatography column.
That figure can be compared only between samples run on the same type of column and the same temperature programme. Without those two pieces of information it is of no use for anything.
The column decides the order
A chromatography column is a thin tube coated on the inside with a sticky material. The nature of that coating decides which compounds are held back longest.
A non-polar column — usually labelled DB-5 or HP-5 — holds compounds by volatility. The order in which they come out is close to the order of boiling points, which is why an analysis on this column can be read like a fragrance’s notes.
A polar column — usually labelled WAX or PEG — holds compounds by polarity. An alcohol can come out after a heavier hydrocarbon, because its hydroxyl group sticks to the stationary phase.
The same sample run on the two types of column gives two different orders.
The temperature programme
The chromatography oven does not stay at a fixed temperature but rises steadily during the run, usually by a few degrees per minute.
So distances along the time axis are not linearly proportional to differences in boiling point. Two compounds thirty degrees apart may be two minutes apart at the start of the programme and forty seconds apart at the end.
The order is right. The spacing cannot be read to scale.
Retention index
To make comparisons between laboratories possible, a retention index is used — converting a compound’s retention time to a standard scale based on a series of n-alkanes run under the same conditions.
The retention index is much more stable and is used alongside the mass spectrum to confirm a compound’s identity. An analysis that gives retention indices is one done seriously.
What to check
When you hold an analysis with a retention-time column, look for three lines: column type, temperature programme, and instrument.
If the column type is missing, the minutes in that analysis have meaning only inside the laboratory, and you cannot compare them with any other analysis.
This is the first thing to look for when someone hands you an analysis, and it is on the list of seven things to check in Part Four.